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Showing posts with the label H5py

Storing Scipy Sparse Matrix As Hdf5

I want to compress and store a humongous Scipy matrix in HDF5 format. How do I do this? I've tr… Read more Storing Scipy Sparse Matrix As Hdf5

Fast And Efficient Way Of Serializing And Retrieving A Large Number Of Numpy Arrays From Hdf5 File

I have a huge list of numpy arrays, specifically 113287, where each array is of shape 36 x 2048. In… Read more Fast And Efficient Way Of Serializing And Retrieving A Large Number Of Numpy Arrays From Hdf5 File

In H5py, What Is Type "|o"?

Debugging a program working with h5py. The hdf5 should look something like this: test.hdf5 -lab… Read more In H5py, What Is Type "|o"?

H5py: Compound Datatypes And Scale-offset In The Compression Pipeline

Using Numpy and h5py, it is possible to create ‘compound datatype’ datasets to be stored in an hdf5… Read more H5py: Compound Datatypes And Scale-offset In The Compression Pipeline

How To Partially Copy Using Python An Hdf5 File Into A New One Keeping The Same Structure?

I have a large hdf5 file that looks something like this: A/B/dataset1, dataset2 A/C/dataset1, datas… Read more How To Partially Copy Using Python An Hdf5 File Into A New One Keeping The Same Structure?

Generating Pcolormesh Images From Very Large Data Sets Saved In H5 Files With Python

I am collecting a large amount of data that will be saved into individual H5 files using h5py. I wo… Read more Generating Pcolormesh Images From Very Large Data Sets Saved In H5 Files With Python

I Want To Convert Very Large Csv Data To Hdf5 In Python

I have a very large csv data. It looks like this. [Date, Firm name, value 1, value 2, ..., value 60… Read more I Want To Convert Very Large Csv Data To Hdf5 In Python

Attributeerror: 'int' Object Has No Attribute 'encode' Hdf5

I'm trying to open a HDF5 file in Python using the following code: with h5py.File('example.… Read more Attributeerror: 'int' Object Has No Attribute 'encode' Hdf5

Failing To Write In Hdf5 File

I am trying to create hdf5 file, but the output file is empty. I have written a python code which … Read more Failing To Write In Hdf5 File

H5py: Correct Way To Slice Array Datasets

I'm a bit confused here: As far as I have understood, h5py's .value method reads an entire … Read more H5py: Correct Way To Slice Array Datasets

What Is The Difference Between The Two Ways Of Accessing The Hdf5 Group In Svhn Dataset?

I need to read the SVHN dataset and was trying to read the filename of the first image. I am strug… Read more What Is The Difference Between The Two Ways Of Accessing The Hdf5 Group In Svhn Dataset?

How To Compress The Data That Saved In Hdf5?

I am using python 2.7 to read a video and store in hdf5. This is my code import h5py import skvideo… Read more How To Compress The Data That Saved In Hdf5?

How To Split The Data Among The Multiple Groups In Hdf5 File?

I have one some data which looks something like this: Generated by trjconv : P/L=1/400 t= 0.00000… Read more How To Split The Data Among The Multiple Groups In Hdf5 File?

Inserting Many Hdf5 Datasets Very Slow

There is a dramatic slowdown when inserting many datasets into a group. I have found that the slowd… Read more Inserting Many Hdf5 Datasets Very Slow

Creating HDF5 Compound Attributes Using H5py

I'm trying to create some simple HDF5 datasets that contain attributes with a compound datatype… Read more Creating HDF5 Compound Attributes Using H5py

How To Fix "No NumPy Equivalent For TypeBitfieldID Exists" Error In Python

I am reading a .h5 file with h5py module. What i am trying to achieve here is print all the groups … Read more How To Fix "No NumPy Equivalent For TypeBitfieldID Exists" Error In Python

What Is The Difference Between The Two Ways Of Accessing The Hdf5 Group In SVHN Dataset?

I need to read the SVHN dataset and was trying to read the filename of the first image. I am strug… Read more What Is The Difference Between The Two Ways Of Accessing The Hdf5 Group In SVHN Dataset?